“SH6”苹果矮化中间砧SnRK2基因的克隆及生物信息学分析
2021-06-22晁琳珂王恩莹李鸽郝素晓赵艺清卢艳芬姚允聪
晁琳珂 王恩莹 李鸽 郝素晓 赵艺清 卢艳芬 姚允聪



摘要 [目的]研究SnRK2基因在调控非生物胁迫方面的生物学功能。[方法]从苹果矮化中间砧“SH6”中分离得到3种SnRK2基因,运用多种生物学工具分析其序列特征。[结果]序列分析表明,SnRK2的CDS序列长度:SnRK2.6为956 bp,SnRK2.7为1 013 bp,SnRK2.8为1 072 bp,分别编码318、337和357个氨基酸的蛋白质;SnRK2蛋白无明显的疏水性,主要定位于细胞质;3种SnRK2序列相似性较高,都具有PKc_like超级家族和S_TKc家族特有的结构。[结论]这3种SnRK2基因可能在苹果非生物胁迫方面发挥重要作用。
关键词 “SH6”;SnRK2;非生物胁迫;基因克隆;序列分析
中图分类号 Q943.2 文献标识码 A 文章编号 0517-6611(2021)09-0098-06
doi:10.3969/j.issn.0517-6611.2021.09.025
Abstract [Objective] To study the biological function of SnRK2 in regulating abiotic stress. [Method] Three SnRK2 genes were isolated from the “SH6” dwarf interstock of Malus, and their sequence characteristics were analyzed by various biological tools. [Result] The sequence analysis showed that the sequence length of SnRK2 was SnRK2.6 956 bp, SnRK2.7 1013 bp, SnRK2.8 1072 bp, encoding 318, 337 and 357 amino acids respectively;SnRK2 protein had no obvious hydrophobicity, and mainly located in the cytoplasm;three SnRK2 sequences had high similarity, and all had PKc_like super family and S_TKc family unique structures. [Conclusion] Three SnRK2 genes could play important role in abiotic stress of Malus.
Key words “SH6”;SnRK2;Abiotic stress;Gene cloning;Sequence analysis
蔗糖非酵解型蛋白激酶(sucrose non-fermenting1-related protein kinase,SnRK)是植物糖信号传导、胁迫、种子萌发和幼苗生长的关键开关,广泛分布于植物体内的蛋白激酶[1],属 Ser/Thr 类蛋白激酶,参与多种信号传导途径,对植物的抗逆境生理起到至关重要的作用[2]。SnRK1亚家族第1个报道的植物SNF1相关序列是RKIN1,一个从黑麦胚乳cDNA文庫中分离出来的cDNA[3]。RKIN1编码一个含502个氨基酸残基(57710 DA)的蛋白,与SNF1和AMPK的氨基酸序列同源性为48%。RKIN1蛋白激酶的结构域结构也类似于SNF1和AMPK,其催化结构域在N端半端[4]。另外,从拟南芥中克隆出10个SnRK2(SnRK2.1~ SnRK2.10)成员,5个受ABA诱导,9个受NaCl胁迫诱导,所有成员均不受低温诱导[5]。有研究表明,在水稻中,10个SnRK2成员(SAPK1~SAPK10)不同程度响应渗透胁迫应答,其中3个成员响应ABA胁迫诱导[6]。在大豆中发现4个SnRK2成员,GmSPK1、 GmSPK2、GmSPK3 、GmSPK4都受高渗胁迫诱导,其中SPK3还响应外源ABA处理[7]。之后相继从玉米中发现11个SnRK2基因家族成员,其中2个受NaCl诱导,2个受低温诱导,3个在转录水平受热处理被抑制[8]。……
