一个辣椒轻斑驳病毒中国分离物的基因组测序及分析
2020-07-08李丽丽郑敏杨洪一
李丽丽 郑敏 杨洪一



摘 要: 利用CTAB法分离辣椒叶片总RNA,利用RT-PCR技术扩增出了辣椒轻斑驳病毒中国分离物Hrb基因组不同区域片段。并经克隆、测序,证明其为辣椒轻斑驳病毒特异序列。经序列拼接,获得了6 290 nt的辣椒轻斑驳病毒中国分离物Hrb基因组全序列;该序列与GenBank中已报道的其他辣椒轻斑驳病毒基因组的序列同源性为94.0%~99.6%。系统进化分析显示辣椒轻斑驳病毒中国分离物Hrb与日本分离物(PMMoV-J、C-1421、Pa18、TPO-2-19)亲缘关系较近,与西班牙分离物Ia亲缘关系较远。
关键词: 辣椒;辣椒轻斑驳病毒;基因组
中图分类号:S641.3 文献标志码:A 文章编号:1673-2871(2020)06-012-05
Abstract: Total RNA was isolated from leaves of pepper using CTAB method. The fragments located in different regions of a Chinese isolate of Pepper mild mottle virus (PMMoV) were amplified by RT-PCR, and the PMMoV-specific fragments were confirmed by cloning and sequencing. A 6290 nt genome sequence of Chinese isolate Hrb was obtained. The identities between the sequence and other reported sequences in GenBank were 94.0%-99.6%. Phylogenetic analysis indicated that there was close genetic relationship between isolate Hrb with Japan isolates (PMMoV-J, C-1421, Pa18, and TPO-2-19). In addition, there was far genetic relationship between isolate Hrb with Spanish isolate Ia.
Key words: Pepper; Pepper mild mottle virus; Genome
辣椒輕斑驳病毒(Pepper mild mottle virus,PMMoV)是当前辣椒生产中遇到的主要病毒之一[1]。辣椒轻斑驳病毒属烟草花叶病毒属(Tobamovirus),病毒粒体呈直杆状。辣椒轻斑驳病毒曾在英国、美国辣椒田中引起毁灭性灾害,目前该病毒已在美国、德国、日本等地广泛发生,并在世界各地广泛分布[2]。向本春等[3]于1994年在新疆辣椒上发现了辣椒轻斑驳病毒,是我国的首次报道。此后,相继在青岛、北京等地广泛被报道[4]。辣椒轻斑驳病毒为种传病毒,带毒种子是病毒扩散的重要因素。辣椒轻斑驳病毒可随辣椒制品进入人体,经消化、排出体外后仍具有侵染性[5]。早期侵染后,辣椒轻斑驳病毒可使叶片轻度褪绿,部分植株矮化,症状可能较轻微;后期可能使叶片斑驳、黄化,可使辣椒果实呈现凹凸、坏死斑点或浅黄色斑驳,从而影响辣椒产量及品质[1]。
辣椒轻斑驳病毒对辣椒生产造成了巨大威胁,因而迫切需要控制辣椒轻斑驳病毒造成的危害。……
